GgaEX6033113 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2273042-2274771:+
Coord C1 exon
chr4:2273042-2273111
Coord A exon
chr4:2273902-2274193
Coord C2 exon
chr4:2274594-2274771
Length
292 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGCTGCCGTGCAGTTC
3' ss Score
6.97
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GAGAAAAGAAGTGAACGGGCCAGAAGATCAGAAACTGCCAGGCCTGAAACTGTGAACTCTGCTGAGAGCA
Seq A exon
TTCCGGTCTCTGACGAAGACTCTGATGCAATGGTGGATGATCCCAACGATGAGGACTTTGTTCCTTTCCGTACCCGCCGCTCCACTCGCATGTCGTTGCGCACTCAGATAGCTCAGCGAGCCGCCCGCTCCTCTGCTGCCAAGATGACGTGTGCCAACTGCCGGACCCCGCTGCAGAAGGGCCAGACTGCCTACCAACGGAAGGGACTCCCTCAGCTCTTCTGCTCCAGCTCCTGTCTCACCACCTTCTCGAAAAGACCGCATGGCAAGAAGATGTGCACCTTCTGTAAAAA
Seq C2 exon
GGAGATCTGGAATACCAGGGACTCCGTGGTTGCCCAGATAGGTTCAGGTGGCTCTTTCCACGAGTTCTGCACCTCCGTCTGCCTCTCCCTCTATGAGGCCCAGCAACAGAGACCAGCACCTCAGTTTGCAGACCCCTCAGACACCATCCGTTGCAGTGTCTGCCATAAGCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'5-10,'5-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.408 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.8),PF064679=zf-FCS=PU(28.9=13.3)
C2:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(40.0=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGAAGTGAACGGGCCA
R:
CCAGGCTTATGGCAGACACTG
Band lengths:
244-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]