RnoEX0102040 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71310527-71311585:-
Coord C1 exon
chrX:71311513-71311585
Coord A exon
chrX:71310772-71311066
Coord C2 exon
chrX:71310527-71310542
Length
295 bp
Sequences
Splice sites
3' ss Seq
TGCCCCGCCTACTCCCACAGTTC
3' ss Score
8.28
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTACAGAAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAACCCGAGGTTGTGGACTCCACTGAGAGCA
Seq A exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTGCGCTCAAGTATGGCACAAAGGGCTGGGCGCTCTTCAATGGGCACCAAGATGTCTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACGGCCTATCAGCGCAAGGGGTTGCCTCAGCTCTTCTGTTCTTCATCTTGTCTCACTACTTTCTCCAAGAAGCCCTTGGGCAGAAAGACCTGTACCTTCTGCAAGAA
Seq C2 exon
GGAGATCTGGAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.538 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(29.5=13.1)
C2:
PF064679=zf-FCS=FE(11.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]