BtaEX6006715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90837938-90838635:+
Coord C1 exon
chrX:90837938-90838044
Coord A exon
chrX:90838305-90838395
Coord C2 exon
chrX:90838503-90838635
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGCCTCCCTCTACAGGCA
3' ss Score
11.45
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGTGGTCCTCACTAACAGCCCCCTGGAGGACCAGCTGCGGGTAGGTGAGTTCTGTCACAGCCATGGCATCAAGCTGGTGGTGGCAGACACCCGGGGCCTGTTCGG
Seq A exon
GCAGCTCTTCTGTGATTTTGGAGAGGAAATGATCCTCACTGATTCCAATGGGGAGCAGCCGCTCAGTGCTATGGTTTCTATGGTCACCAAG
Seq C2 exon
GACAACCCCGGTGTTGTTACTTGTCTGGATGAGGCCCGACATGGCTTTGAGAGTGGTGACTTCGTCTCCTTTTCGGAAGTACAGGGCATGATTGAACTCAATGGAAGTCAGCCCATGGAAATCAAAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'18-12,'18-10,19-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCACAGCCATGGCATC
R:
CCATGGGCTGACTTCCATTGA
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]