GgaEX6009816 @ galGal3
Exon Skipping
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2270010-2270592:-
Coord C1 exon
chr12:2270486-2270592
Coord A exon
chr12:2270270-2270360
Coord C2 exon
chr12:2270010-2270151
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTGCGTTGTCCCTGCCCAGGCA
3' ss Score
6.52
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGCTGCTGACCGAGTCCCCGCTGGAGGAGCAACTCCGTATCGGGGACATCTGCCATGCCAAGGGTATCTGCTTCATCGTGGCCGATGCCAAAGGGCTGGCAGG
Seq A exon
GCAGCTCTTCTGTGACTTCGGGGAGCACTTTGTTGTCCGTGACCCGGTGGAAGGGGACCCGCTCTGTGCCACCGTGCAGCACGTCTCCCAG
Seq C2 exon
GGCAACCCGGGGATCGTAACCTGCGCAGGGGCAGACAAGAACCGCGGCCACCGCTTCAGTGACGGTGACCTGGTGGTGTTCTCTGGTGTGGAGGGCATGGTGGAGCTGAACAGCAGCGAGCCCTGCCCTGTACACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.2=100)
A:
PF0089916=ThiF=PD(6.4=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATGCCAAGGGTATCTG
R:
CTGCTGTTCAGCTCCACCATG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]