MmuEX6068774 @ mm10
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107976306-107977039:+
Coord C1 exon
chr9:107976306-107976412
Coord A exon
chr9:107976710-107976800
Coord C2 exon
chr9:107976904-107977039
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACTTCCGCCACCCACACTAGGCG
3' ss Score
5.55
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACCTTTGTGTCACAAGCATGGAGTCCGCTTCCTGATGGCTGAAACCCGGGGCCTTGTGGG
Seq A exon
GCGGTTATTCTGTGACTTTGGTGAGGACTTCACAGTTTTGGACCCTACTGAGGTAGAACCCATGACAGCTGCCATCCAGGACATCTCTCAG
Seq C2 exon
GGTTTCCCCGGCATTGTCACCCTGAGAGGAGACACCAAAAGACATTCCTTCCACGATGGGGACTTGGTGATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'5-14,'5-12,6-14
Average complexity
S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.043
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGTCCGCTTCCTGATG
R:
ACGGACAGACTGTGGAGAACA
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types