DreEX6080092 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20724390-20725003:+
Coord C1 exon
chr23:20724390-20724496
Coord A exon
chr23:20724583-20724673
Coord C2 exon
chr23:20724871-20725003
Length
91 bp
Sequences
Splice sites
3' ss Seq
AACATTCTGTTATTTAATAGGCA
3' ss Score
7.68
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTTGTTGTGCTCACCAACTCTAGTCTTGATGAACAGACACGTATCGGGGAATTTTGCCACAGTAATGGCATCAAGTTGATTGTGGCAGACACACGTGGACTGTTTGG
Seq A exon
GCAACTGTTCTGTGATTTTGGGGAGGAAATGATAGTATTCGACACAAACGGAGAACAGCCATTGAGCGCCATGATCTCAATGATCACAAAA
Seq C2 exon
GACAGCGCTGGTGTGGTTACGTGTCTGGATGAAGCACGGCACGGATTTGAGAGCGGAGACTATGTCACTTTCACAGAAGTGCAGGGCATGACGGAACTTAATGGCTGTGATCCAGTAGAGATCAAGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'17-11,'17-10,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(26.6=91.7)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGACACGTATCGGGGA
R:
TTAAGTTCCGTCATGCCCTGC
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]