MmuEX6043830 @ mm10
Exon Skipping
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20670204-20670873:+
Coord C1 exon
chrX:20670204-20670310
Coord A exon
chrX:20670544-20670634
Coord C2 exon
chrX:20670741-20670873
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGCCACTCTCTCTCTACAGGCA
3' ss Score
12.53
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGGTGGTCCTCACCAACAGCCCCCTGGAAGCCCAGCTGCGAGTGGGGGAGTTCTGTCATAGCCGTGGTATCAAGCTAGTGGTGGCAGATACAAGAGGCCTGTTTGG
Seq A exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTCCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
Seq C2 exon
GACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGATCCAACTCAATGGATGTCAGCCCATGGAGATCAAAGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-'31-21,'31-19,32-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGGTATCAAGCTAGTGG
R:
TCTCCATGGGCTGACATCCAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types