RnoEX6024986 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1734628-1735302:-
Coord C1 exon
chrX:1735196-1735302
Coord A exon
chrX:1734867-1734957
Coord C2 exon
chrX:1734628-1734760
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGTCCCTTTCTATAGGCA
3' ss Score
10.57
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGGTGGTCCTTACCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTGAGTTCTGTCATAGCCGTGGCATCAAGCTAGTGGTGGCAGATACAAGAGGCCTATTTGG
Seq A exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTTCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
Seq C2 exon
GACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGGTCCAACTCAATGGATGTCAGCCCATAGAGATCAAAGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'20-11,'20-10,21-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAGTGGGTGAGTTCTG
R:
TGAGTTGGACCATGCCCTGTA
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]