BtaEX6095309 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50992646-50993387:+
Coord C1 exon
chr22:50992646-50992752
Coord A exon
chr22:50993071-50993161
Coord C2 exon
chr22:50993252-50993387
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCACCCCGCCACAGGCA
3' ss Score
7.5
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGTGGTGCTGACCGCCTCGAGGCTGGAGGAGCAGCTGAGAGTGGGCACCTTGTGCCACGAGCATGGAGTCTGCTTCCTGGTGGCAGACACCCGAGGCCTTGTGGG
Seq A exon
GCAGTTGTTCTGTGACTTTGGTGAGAACTTCACTGTGCAGGACCCCACAGAGGCAGAACCCCTGACGGCCAACATCCAGCATATCTCCCAG
Seq C2 exon
GGCTCCCCTGGCATTCTCACTCTGAGAGAAGAGGCTGGTACCCACCACTTCCACACAGGGGATTGGGTGACTTTCTCAGGCATTGAGGGCATGGTGGAGCTCAACGGCTGTGATCCTCGGCCTCTCCATGTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGGAGTCTGCTTCCTG
R:
CATGGAGAGGCCGAGGATCA
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]