RnoEX6037556 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754955-116755698:+
Coord C1 exon
chr8:116754955-116755061
Coord A exon
chr8:116755369-116755459
Coord C2 exon
chr8:116755563-116755698
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGCCAACCATACTAGGCG
3' ss Score
6
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAGTGGTGCTGACTGACTCCAAGCTAGAGGACCAGCTGAATATGGGAGCCTTGTGCCATAAGAATAGAGTCTACTTCCTCATGGCTGAAACCCGGGGCCTTGTGGG
Seq A exon
GCGGTTATTCTGTGATTTTGGTGAGGACTTCACTGTTGTGGACCCTACAGAGGTGGAGCCCACGTCAGCTGCCATCCAGGACATCTCTCAG
Seq C2 exon
GGCTCCCCCGGCATTGTCACTCTGAGAGGAGGCAGCAAAAGACCTTCCTTTTATGATGGGGACTTGGTGATGTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTCATTCTCCACAGCCTGTCCGTGTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.239
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
PF0089916=ThiF=PD(4.5=19.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGCTAGAGGACCAGCT
R:
TGAGAACATCACCAAGTCCCCA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]