BtaEX6007617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126152268-126164872:-
Coord C1 exon
chrX:126164303-126164872
Coord A exon
chrX:126152630-126152779
Coord C2 exon
chrX:126152268-126152411
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATATTTCCTGCCCTTTTTAGTGG
3' ss Score
8.58
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATCGAGGACGTTGTTATAGAAGATGTTCAGTGTCCAGATATCATGGAAGAAGCAGATGTATCTGAAACAGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACAGAAGAAGTGTCTTTAGCACATTGTACAGTCCCAGATGACGTCTTAGCTTCTGATATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGAGTGAGTCCATACACGTGTCTGACATTGGACACGTTGAACACGTTGTTCATGATAGCGTAGTAGAGGCAGAAATCGTCACTGATCCTCTGACAGCCGATGTAGTGTCAGAAGAAGTATTGGTAGCAGATTGTGCCTCAGAAGCAGTCATAGATGCCAACGGGATCCCTGTGGACCAGCAGGAGGATGACAAAGGCAACTGTGAGGACTACCTTATGATTTCCT
Seq A exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCCTCTGGAATGACCATGGATGCAGAGTCAGAGATCGATCCTTGTAAAGTAGATGGCACTTGCCCTGAAGTTATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAGGATGACTTAG
Seq C2 exon
GTGGGACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTACTTGATCAGAATAACAGTATTCGTGTGCCAAGAGAAAAGATGGTTTATATGACTGTCAACGACTCTCAGCAAGAAGATGAAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.451 C2=0.878
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.0=73.8)
A:
PF047048=Zfx_Zfy_act=FE(14.9=100)
C2:
PF047048=Zfx_Zfy_act=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTGTCTGACATTGGACA
R:
TCTCAGGCTCACTCTCCACAA
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]