RnoEX0101822 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63165618-63178338:-
Coord C1 exon
chrX:63177769-63178338
Coord A exon
chrX:63165943-63166092
Coord C2 exon
chrX:63165618-63165761
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTCTGCTTGCTTAGTGG
3' ss Score
5.03
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGTTGTGGATTCAGACATAACCGTTCATAACTACGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATTGAGGATGTTGTTATAGAAGATGTCCAATGTACAGATATCATGGACGAAGCAGATGTGTCCGAAACAGTCATCATCCCTGAACAAGTCCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACGCATTGCACAGTTCCAGATGATGTTTTAGCTTCCGATATTACTTCAGCCTCAATATCTATGCCTGAACATGTCTTGACAAGTGAATCTATACATGTGTCTGACGTTAGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAGATCCTCTGACCGCTGATGTTGTTTCGGAAGAAGTGCTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGATGCCAACGGGGTCCCTGTGAACCAGCAGGATGAAGACAAAGCCAACTGTGAGGACTACCTTATGATCTCTT
Seq A exon
TGGATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAAGATGACTTAG
Seq C2 exon
GTGGAACCGTAGACATTGTGGAAAGCGAGCCTGAGAACGAGCATGGGGTTGAACTGCTTGATCCAAACAACAGTATGCGTGTTCCCAGAGAAAAGATGGTTTATATGGCTGTTAATGACACTCAGCAAGAAGAGGAAGAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.471 C2=0.808
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(98.6=73.8),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
A:
PF047048=Zfx_Zfy_act=FE(14.9=100)
C2:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.3=98.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAAGAAGTGCTGGTAGCA
R:
TGCTGAGTGTCATTAACAGCCA
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]