DreEX0086450 @ danRer10
Exon Skipping
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16866449-16871842:+
Coord C1 exon
chr24:16866449-16866790
Coord A exon
chr24:16867355-16867507
Coord C2 exon
chr24:16871705-16871842
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAACACTCACTTGCTTTCAGTGG
3' ss Score
5.74
5' ss Seq
TGGGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
AGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATGTTGATGATGACGATGATGAAGGGCTTGGCACCATTGCCGTGGAGACCTGTGTGATGTCACCTGATGATGTGGCTCTGGAGGATGAAGGGCTGCAGGTGGATGTGGTGACCGACGCTCAGGTACAAGAGGATCCAGACACCTGCGGAGACTATCTGATGATCTCCT
Seq A exon
TGGATGAAGCTGGAAAGGTGGTGTCTGATGAAGATGCTAAGGTCACCATTGAGGGCACTTTAGAGGATTCAGAAGATGTGGAGAAGGATGATGATGGTCAAGAGGTCATCAAAGTGTACATCATCAAGGCTCACCCAGGGGAGGATGACTTGG
Seq C2 exon
GAGGCACAGTCGACATAGGAGACGCTGAGCTAGATGTGGATGAAACCGTGGAGCTGGTGGATTCTTCTGGACTGCCCATACGAGAGAAAATGGTGTACATGTCAATGGATGAAGCCAATCAAAGTCAGGATGACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453-'9-8,'9-6,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.481 C2=0.702
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(37.4=99.1)
A:
PF047048=Zfx_Zfy_act=FE(16.1=100)
C2:
PF047048=Zfx_Zfy_act=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGTGGCGGAGTATGTG
R:
TCCACATCTAGCTCAGCGTCT
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]