GgaEX0024071 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:121647172-121655781:-
Coord C1 exon
chr1:121655215-121655781
Coord A exon
chr1:121647514-121647663
Coord C2 exon
chr1:121647172-121647315
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTAATAACTTGTTTTTGTAGTGG
3' ss Score
6.11
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
AGATGTAGTCGACTCAGATATAACTGTGCATAATTTTGTTCCTGACGATCCAGATTCTGTAGTAATCCAAGATGTCATTGAGGATGTTGTTATTGAGGATGTTCAGTGCCCAGATATTATGGAGGAGCCAGACGTATCTGAAACTGTCATTATTCCTGAACAAGTGCTGGACACAGACGTGGCTGAAGAGGTTTCTTTGGCTCATTGCACTGTCCCAGATGATGTTTTGGCTTCAGACATAACAGCAGAAGCAATGTCTATACCAGAACATGTACTGACGAGCGAGTCAATGCATGTACCTGAAGTTGGACATGTAGAACATGTAGTTCATGATAATGTTGAAGAAGCAGATATTGTCACTGATACTCTGGGAACAGATGTTGTTTCTGAAGAGGTCTTGGTGGCAGACTGCGCATCGGAAGCAGTGATCGATGCCAATGGGATCCCTGTGGAACATCAAGACGAGAAGGGCAACTGTGAAGATTACCTGATGATTTCTC
Seq A exon
TGGATGATGCTGGTAAGATAGAACATGAAGGTTCTGCTGAAATTACCATGGAAGCAGAGTCAGAAAGTGGATCTTGTAAAGTGGATGGCATTTGTCCAGAAGTCATCAAGGTCTATATATTCAAAGCAGACCCTGGAGAAGATGATTTAG
Seq C2 exon
GGGGCACAGTAGACGTTGTGGAGAGCGAGCCAGAAAATGATCATGCAGTTGGCTTACTTGATCAAAATAGCAGTATTCGTATTCCAAGGGAGAAAATGGTTTACATGACCGTAAATGATTCTCAGCACGAAGACGAAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.373 C2=0.755
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.6=73.7)
A:
PF047048=Zfx_Zfy_act=FE(15.2=100)
C2:
PF047048=Zfx_Zfy_act=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGCGAGTCAATGCATG
R:
CTCCACAACGTCTACTGTGCC
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]