MmuEX1028758 @ mm10
Exon Skipping
Gene
ENSMUSG00000079509 | Zfx
Description
zinc finger protein X-linked [Source:MGI Symbol;Acc:MGI:99211]
Coordinates
chrX:94081825-94098852:-
Coord C1 exon
chrX:94098283-94098852
Coord A exon
chrX:94082150-94082299
Coord C2 exon
chrX:94081825-94081968
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTCTGCTTGCTTAGTGG
3' ss Score
5.03
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGTTGTGGATTCCGACATAACCGTACATAACTATGTTCCCGATGACCCAGATTCAGTTGTCATCCAGGATGTCATTGAGGATGTTGTTATAGAAGATGTCCAGTGTACAGACATCATGGACGAAGCAGATGTATCGGAAACAGTCATCATCCCTGAACAAGTGCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACACATTGCACAGTTCCAGATGATGTTTTAGCTTCTGATATCACTTCAGCCTCAATATCTATGCCGGAACATGTCTTGACAAGTGAATCTATACATGTGTCTGACGTTGGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAGATCCTCTGGCCGCTGATGTTGTCTCAGAAGAAGTGTTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGATGCCAACGGGATCCCTGTGAACCAGCAGGATGAAGAGAAAAACAACTGTGAGGACTACCTTATGATCTCTT
Seq A exon
TGGATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTGACCCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAAGATGACTTAG
Seq C2 exon
GTGGAACTGTAGATATCGTCGAAAGTGAGCCTGAGAATGAGCATGGAGTTGAACTACTCGATCCAAACAATAGTATTCGCGTTCCCAGGGAAAAGATGGTTTATATGGCTGTTAACGACTCTCAGCAAGAAGAAGAAGAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079509_CASSETTE2
Average complexity
S
Mappability confidence:
50%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.462 C2=0.837
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.1=73.8)
A:
PF047048=Zfx_Zfy_act=FE(14.9=100)
C2:
PF047048=Zfx_Zfy_act=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACGTTGAACATGTGGT
R:
CCATGCTCATTCTCAGGCTCA
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types