BtaEX6008392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4822043-4823073:-
Coord C1 exon
chr2:4822960-4823073
Coord A exon
chr2:4822686-4822773
Coord C2 exon
chr2:4822043-4822149
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCACCTGCCCCAGGTC
3' ss Score
7.38
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGCTGGAGGTGGGTGCCAACACGCGGGTGCGGGACGCCTGTGACAGCATCGCCGCCCGGCTGCAGCTTGCCTCCTGGGAGGGCTGCAGCCTTTTCATCAAGATCGCAGACAAG
Seq A exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGACTCCTTGCGGCAAGTGTCCGACTGGGTAAAGAAGAACAAGCCCCAGAAGGAAG
Seq C2 exon
GGGCCCCTGTGACAATCCCCTATCAGGTATATTTCATGCGGAAACTGTGGCTCAACGTGGCCCCTGGGAAAGATGTGAAGGCAGACACCATCCTTCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'51-55,'51-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCCTGTGACAGCATC
R:
AGGATGGTGTCTGCCTTCACA
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]