RnoEX6058355 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24749216-24750121:-
Coord C1 exon
chr18:24750008-24750121
Coord A exon
chr18:24749642-24749729
Coord C2 exon
chr18:24749216-24749322
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCTCCTCCCCAAGGTC
3' ss Score
9.91
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACCTTGGAGGTGAGCAGCAGTAGCCGGGTGCGAGACCTATGTGAGGGCATCGCCACTAGGCTCCAGCTGGCCTCCTGGGATGGCTGCAGCCTCTTCATCAAGATCACAGACAAG
Seq A exon
GTCATCAGCCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
Seq C2 exon
GGGCCTCCACGACACTCCCCTACCAGGTGTTCTTCATGCGGAAACTGTGGCTCAATGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'51-63,'51-62,54-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(13.9=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGGTGAGCAGCAGTAG
R:
ATTGAGCCACAGTTTCCGCAT
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]