DreEX6022040 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28115756-28116830:+
Coord C1 exon
chr6:28115756-28115869
Coord A exon
chr6:28116549-28116636
Coord C2 exon
chr6:28116721-28116830
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGCCATTTTCTATTTGTCAGGTT
3' ss Score
7.73
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATATTTGAGGTGGCAACCAATACTAAGATCAGAGACCTGGTCCGGACCATTGCTAATAAACTCATGCTGTCCACAGCTGAAGGTTTCAGCCTCTTCATGAAAACTCCTGATAAG
Seq A exon
GTTCTGAGTTTGAATGAAACAGACTACTTCTTTGACAGCCTCAGACAGATTACTGATTGGTCCAAAAGAGCAAAGAGAGTGAATCAAG
Seq C2 exon
CAGGGGCTCCAGTGAATGTGTCCTACACTGTTTTCTTTATGAGGAAGCTATGGTTCAACATTATCCCTGGGAGAGATGTGGAGGCAGATCTCATCTTCCATTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'41-43,'41-42,42-43=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(38.9=100)
A:
PF093795=FERM_N=FE(30.5=100)
C2:
PF093795=FERM_N=PD(18.9=48.6),PF0037313=FERM_M=PU(12.4=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGAGACCTGGTCCGGAC
R:
ATCTGCCTCCACATCTCTCCC
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]