GgaEX6045461 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2307843-2310158:+
Coord C1 exon
chr9:2307843-2307956
Coord A exon
chr9:2308826-2308913
Coord C2 exon
chr9:2310052-2310158
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATCGCTTGGCTGCTTCCAGGTG
3' ss Score
8.11
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ACATTTGATGTGGGAACAAACACCAAAAACCGGACTCTATGTCAGAACATCGCTTCCAAACTGCAGCTGAGCTCTTGGGAAGGTTTCAGCCTCTTTGTCAAGATTGCAGACAAG
Seq A exon
GTGATCAGTCAGAATGAAGCAGACTATTTCTTTGACTCACTGAGGCAGCTGACAGATTGGACCAAGAGGAACAAACCAGTGAAAGATG
Seq C2 exon
GTGCCACTATGTCTGTAGCTTATGAAGTGTACTTCATGAGAAAGCTGTGGTTGAATGTAACTCCTGGGAAGGACCTAAAAGCTGATTCTATTTTTCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(11.6=36.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTCTATGTCAGAACATCGC
R:
CAGCTTTTAGGTCCTTCCCAGG
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]