MmuEX6000756 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31961808-31962779:-
Coord C1 exon
chr18:31962666-31962779
Coord A exon
chr18:31962278-31962365
Coord C2 exon
chr18:31961808-31961914
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCCCTCTTCCCTAAGGTC
3' ss Score
10.36
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCCATGGAAGTGGGCAGCAGTAGTCGGGTGAGAGACCTATGTGAGGGCATAGGCACCAGGCTCCAGCTGGCCTCCTGGGATGGCTGCAGCCTCTTCATCAAGATCACAGACAAG
Seq A exon
GTCATCAGTCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
Seq C2 exon
GGGCCTCCGTGACACTTCCCTATCAGGTGTTCTTCATGCGGAAACTGTGGCTCAACGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'51-62,'51-60,53-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAAGTGGGCAGCAGTAG
R:
TCACGTTGAGCCACAGTTTCC
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types