DreEX6063699 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3174893-3178227:+
Coord C1 exon
chr18:3174893-3175006
Coord A exon
chr18:3177394-3177481
Coord C2 exon
chr18:3178121-3178227
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGGTGTGTGTTGTAGGTG
3' ss Score
10.91
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCATTTGAGGTGGAGTCCAGCACAAAGGCTAAAGATTTCTGTCTGAACATCTCCAGCAGACTCTTACTCAAAACACCAGAAGGCTTTAGTCTGTTTGTCAAGATCTCTGACAAG
Seq A exon
GTGATCAGTGTGCCTGAGGGGGATTTCTTCTTCGACTTTGTCCGCCATTTGACCGATTGGATAAAGAAAGCAAGACCTGCTAAAGATG
Seq C2 exon
GTATAGTGCCTTCACTGACCTACCAGGTGTTCTTCATGAAGAAGCTATGGACAACCACCGTTCCAGGCAAAGACTCCTTTGCAGACTCCATCTTCCACTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'47-45,'47-44,48-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.8=100)
A:
PF093795=FERM_N=FE(31.2=100)
C2:
PF093795=FERM_N=PD(17.2=44.4),PF0037313=FERM_M=PU(10.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCAGCACAAAGGCTA
R:
GGAACGGTGGTTGTCCATAGC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]