RnoEX6003851 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163005719-163006911:-
Coord C1 exon
chr1:163006798-163006911
Coord A exon
chr1:163005992-163006079
Coord C2 exon
chr1:163005719-163005825
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTGCTTCATCCCTAGGTC
3' ss Score
9.76
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCTTTTGAGGTAGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAACATCGCCAGCCGGCTGCTCCTCAAGTCTTCTGAGGGATTCAGCCTTTTTGTCAAAATCGCAGATAAG
Seq A exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTTGACTTTGTTCGACACCTGACAGACTGGATAAAGAAGGCACGGCCCATCAAGGATG
Seq C2 exon
GAATCGTGCCCTCACTGACCTACCAGGTGTTCTTCATGAAGAAGCTGTGGACCACCACCGTGCCTGGCAAGGACCCCATGGCCGACTCCATATTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTGCCAGAACATCGCC
R:
AGTGGAATATGGAGTCGGCCA
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]