MmuEX6012415 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98054608-98055904:-
Coord C1 exon
chr7:98055791-98055904
Coord A exon
chr7:98054874-98054961
Coord C2 exon
chr7:98054608-98054714
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTGATGACTGCGTCCCTAGGTC
3' ss Score
8.24
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GCTTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAACATCGCCAGCCGGCTGCTGCTCAAGTCTTCCGAGGGATTCAGCCTTTTTGTCAAAATCGCAGATAAG
Seq A exon
GTCATCAGCGTCCCAGAGAATGATTTCTTCTTTGACTTTGTCCGACACCTGACAGACTGGATAAAGAAAGCACGGCCCATCAAGGACG
Seq C2 exon
GAATCGTGCCCTCACTAACCTACCAGGTGTTCTTCATGAAGAAGCTGTGGACCACCACAGTGCCGGGCAAGGACCCCATGGCTGACTCCATCTTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'79-82,'79-79,80-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTGCCAGAACATCGCC
R:
AGTGGAAGATGGAGTCAGCCA
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types