DreEX6084373 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22266993-22267997:+
Coord C1 exon
chr21:22266993-22267106
Coord A exon
chr21:22267280-22267367
Coord C2 exon
chr21:22267891-22267997
Length
88 bp
Sequences
Splice sites
3' ss Seq
AATGTCTCATCGTGTTTCAGGTG
3' ss Score
10.92
5' ss Seq
ACGGTGATT
5' ss Score
4.54
Exon sequences
Seq C1 exon
GCTTTTGAGGTTGAATCCAGTACAAAAGCCAAAGATTTCTGCCGAAACATCGCCGGCAGGATGATGCTTCATTCCTCTGAAGGTTTCAGCTTGTTTGTCAAAATTTCTGACAAG
Seq A exon
GTGATCAGTGTGCCAGAAGGAGATTTCTTCTTTGACTTTGTTCGACATCTGACAGACTGGATCAAAAAAGCCAGAGCTGTGAAAGACG
Seq C2 exon
GCACAGTTCCTTCATTGACCTACCAAGTGTTTTTCATGAAGAAACTGTGGACTAACACTTTCCCAGGCAAAGATCCCATGGCCGACTCCATTTTCCATTACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'46-45,'46-44,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.0=30.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCTGCCGAAACATCGCC
R:
GAGTCGGCCATGGGATCTTTG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]