BtaEX6060058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57408177-57409744:+
Coord C1 exon
chr15:57408177-57408290
Coord A exon
chr15:57409370-57409457
Coord C2 exon
chr15:57409638-57409744
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAGAACGACCGTGTCCCTAGGTC
3' ss Score
6.44
5' ss Seq
ATGGTAACG
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCCTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAATATCGCCGCCCGGCTGCTCCTCAAGTCCTCCGAGGGATTCAGCCTCTTTGTCAAAATTGTAGATAAG
Seq A exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTCGACTTTGTACGACATCTGACGGACTGGATAAAGAAAGCCCGGCCTGTCAGGGATG
Seq C2 exon
GAGTCGTGCCCTCGCTGACCTACCAAGTGTTCTTCATGAAGAAGCTGTGGACCACCACAGTGCCAGGGAAGGACCCCATGGCCGATTCCATCTTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'45-51,'45-50,46-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.4=100)
A:
PF093795=FERM_N=FE(30.9=100)
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGCCAGAATATCGCCG
R:
AGTGGAAGATGGAATCGGCCA
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]