GgaEX6006891 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198109232-198110810:-
Coord C1 exon
chr1:198110697-198110810
Coord A exon
chr1:198109549-198109636
Coord C2 exon
chr1:198109232-198109338
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATCATGTACTGTGCCCCCAGGTC
3' ss Score
9.15
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GCATTTGAGGTGGAGTCTAGCACAAAAGCAAAGGATTTCTGCCAGAACATCTCCAACAGACTGCTCCTAAAGTCTTCTGAAGGCTTCAGCCTCTTTGTCAAGATCTCTGACAAG
Seq A exon
GTCATAAGTGTGCCCGAGGGAGATTTCTTCTTTGACTTTGTGAGACACCTGACGGACTGGATAAAGAAAGCAAGACCAGCAAAAGATG
Seq C2 exon
GTATAGTGCCTTCCCTCACCTACCAAGTGTTCTTCATGAAAAAGCTGTGGACCAACACAACACCTGGAAAGGATTCAATGGCAGATTCAATCTTCCACTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(39.8=100)
A:
PF093795=FERM_N=FE(31.2=100)
C2:
PF093795=FERM_N=PD(17.2=44.4),PF0037313=FERM_M=PU(12.4=38.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTCTAGCACAAAAGCA
R:
CAGGTGTTGTGTTGGTCCACA
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]