BtaEX6008923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19369187-19376609:-
Coord C1 exon
chr2:19376497-19376609
Coord A exon
chr2:19370088-19370157
Coord C2 exon
chr2:19369187-19369248
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGAAATATATTTAATTACAGGGG
3' ss Score
5.2
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
TTTAAAGGATTTGATCCAAATCAGCTAAGTGTCGCTACATTACTGTTTGAGGGGGACCGTGAGAAGGTTCTTCAGCATGAAAAGCAAGTGTATGACATCGCTGCAAAATTTGG
Seq A exon
GGGATTGGCAGCTGGGGAAGATAATGGACAGAGAGGTTATTTGTTGACCTATGTCATTGCATACATTCGA
Seq C2 exon
GATTTGGGTTTGGAATACTATATATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(13.5=100)
A:
PF0291314=FAD-oxidase_C=FE(8.4=100)
C2:
PF0291314=FAD-oxidase_C=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGATCCAAATCAGCTAAGTGTCG
R:
CTGTCCCAAGGAGCAGAAGTC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]