DreEX0012127 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1598732-1600813:-
Coord C1 exon
chr9:1600701-1600813
Coord A exon
chr9:1599580-1599649
Coord C2 exon
chr9:1598732-1598793
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTGTGTGTGTGTAGGGG
3' ss Score
8.17
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
TTTAAAGGCTTCGACCCTCATCATCTGTGTGTGGCCACGCTGCTGTTTGAGGGGGATCGTGGGAAGGTTCTGCAGCACGAGAAACAGGTTTACGACATCGCAGCCAAATTCGG
Seq A exon
GGGTCTGGCAGCAGGAGAGGACAACGGTCAGAGGGGCTACATGCTGACGTTTGTGATCGCCTATCTGCGG
Seq C2 exon
GATTTGGGAATGGATTACTATGTGATCGGTGAGTCGTTTGAGACGTCTGTGCCTTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(13.5=100)
A:
PF0291314=FAD-oxidase_C=FE(10.4=100)
C2:
PF0291314=FAD-oxidase_C=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCTTCGACCCTCATCAT
R:
CCAAGGCACAGACGTCTCAAA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]