HsaEX6016841 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178364346-178372759:+
Coord C1 exon
chr2:178364346-178364458
Coord A exon
chr2:178370234-178370303
Coord C2 exon
chr2:178372698-178372759
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTTCTTTAATTACAGTGG
3' ss Score
5.08
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
TTTAAAGGATTTGACCCAAATCAGCTAAGTGTAGCCACATTACTGTTTGAGGGGGATCGTGAGAAGGTTCTTCAACATGAAAAACAAGTGTATGATATTGCTGCAAAATTTGG
Seq A exon
TGGGTTGGCAGCTGGAGAAGATAATGGACAGAGAGGTTATTTGCTGACCTATGTTATTGCATACATTCGA
Seq C2 exon
GACTTGGCTTTGGAATACTATGTATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(13.5=100)
A:
PF0291314=FAD-oxidase_C=FE(8.4=100)
C2:
PF0291314=FAD-oxidase_C=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGACCCAAATCAGCTAAGTGT
R:
CTGTCCCAAGGAGCAGAAGTC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)