RnoEX6017471 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62713893-62721421:+
Coord C1 exon
chr3:62713893-62714005
Coord A exon
chr3:62719200-62719269
Coord C2 exon
chr3:62721360-62721421
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGTTTGCTCCTTGTTTACAGTGG
3' ss Score
5.44
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
TTTAAAGGATTTGATCCAAATCAAATAAGCGTAGCCACATTACTGTTCGAGGGAGACCGTGAGAAGGTTCTTCAGCATGAAAAACAAGTGTATGACATCGCAGCAAAATTTGG
Seq A exon
TGGTCTGGCTGCTGGAGAAGATAACGGGCAGAGGGGTTATTTGCTGACTTATGTCATTGCATACATGCGT
Seq C2 exon
GATTTGGGTTTGGAATACTATGTAGTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(13.5=100)
A:
PF0291314=FAD-oxidase_C=FE(12.4=100)
C2:
PF0291314=FAD-oxidase_C=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAAATCAAATAAGCGTAGCCAC
R:
TGTCCCAAGGAGCAGAAGTCT
Band lengths:
162-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]