MmuEX0004288 @ mm9
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75732102-75741036:+
Coord C1 exon
chr2:75732102-75732214
Coord A exon
chr2:75738239-75738308
Coord C2 exon
chr2:75740975-75741036
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTTCCTTATTTACAGTGG
3' ss Score
6.3
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
TTTAAAGGATTTGATCCAAATCAAATAAGTGTAGCCACATTACTGTTCGAGGGAGACCGTGAGAAGGTTCTTCAGCACGAAAAACAAGTGTATGACATCGCAGCAAAATTTGG
Seq A exon
TGGTCTGGCTGCTGGAGAAGATAACGGTCAGAGGGGTTATTTGCTGACTTATGTCATTGCATATATTCGT
Seq C2 exon
GATTTGGGTTTGGAATACTATGTAATAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PD(35.7=95.2)
A:
PF0291314=FAD-oxidase_C=FE(8.4=100)
C2:
PF0291314=FAD-oxidase_C=FE(7.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATCAAATAAGTGTAGCCACA
R:
TGTCCCAAGGAGCAGAAGTCT
Band lengths:
160-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: