BtaEX6009018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016836 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:24097325-24105499:-
Coord C1 exon
chr2:24105358-24105499
Coord A exon
chr2:24101959-24102030
Coord C2 exon
chr2:24097325-24097509
Length
72 bp
Sequences
Splice sites
3' ss Seq
GGGGTTGATTTACATTTTAGGTA
3' ss Score
6.94
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GATCTGTGAATGCTTGTGAAAAGACCTCATTTATGTTTCTACGGCAAGAGTTGCCTGTGAGATTGGCAAATATAATGAAAGAAATAAGTCTTCTTCCAGATAATCTTCTCAGGACACCGTCAGTTCAGTTGGTACAGAGCTG
Seq A exon
GTATATCCAGAGTCTTCAAGAGCTTCTTGAGTTTAAGGACAAAAGTGCTGAAGATGCTAAAACTATTTATGA
Seq C2 exon
CTTTACAGACACTGTGATACGGATCAGGAACCGACACAATGACGTGATACCCACAATGGCTGAAGGTGTGGTTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAGAATGTTCAGTATTTTTTGGATCGTTTCTACATGAGTCGAATTTCAATTAGAATGTTACTTAATCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016836-'4-6,'4-2,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.1=100)
A:
PF104364=BCDHK_Adom3=FE(14.4=100)
C2:
PF104364=BCDHK_Adom3=FE(37.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTGCCTGTGAGATTGGC
R:
ACCACACCTTCAGCCATTGTG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]