DreEX0054429 @ danRer10
Exon Skipping
Gene
ENSDARG00000013128 | pdk1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
Coordinates
chr9:3137400-3140610:-
Coord C1 exon
chr9:3140469-3140610
Coord A exon
chr9:3140310-3140381
Coord C2 exon
chr9:3137400-3137584
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTGCGTCTCTGTAGGTA
3' ss Score
11.1
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GTTCGGAGAACGCCTGTGAGAAAACGTCATTTACATTCTTAAGGCAGGAGCTGCCCGTCAGGCTGGCGAATATAATGAAAGAAATCGACTTGCTTCCTGACAACCTTCTGAGAACTCCTTCAGTGCGGCTGGTGCAGAGCTG
Seq A exon
GTACATGCAAAGTTTTCAGGATATACTGGAATTCAAGGACAAGGATGCTGACGATGAAACAGTCAATCATGA
Seq C2 exon
TTTCACAGATGCTGTGATTAAGATCAGAAACCGCCACAATGATGTGGTGCCCACCATGGCTCAGGGTGTTGTGGAATACAAGGAGACCTACGGCACTGACCCCATCACCAGTCAGAATATGCAGTACTTTCTGGACCGTTTCTACATGAGCAGGATTTCAATCAGAATGCTCCTGAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013128-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.1=100)
A:
PF104364=BCDHK_Adom3=FE(14.4=100)
C2:
PF104364=BCDHK_Adom3=FE(37.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTGCTTCCTGACAACCT
R:
TTCTGACTGGTGATGGGGTCA
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]