GgaEX1042828 @ galGal3
Exon Skipping
Gene
ENSGALG00000013235 | PDK1
Description
NA
Coordinates
chr7:19080382-19082820:-
Coord C1 exon
chr7:19082679-19082820
Coord A exon
chr7:19081174-19081245
Coord C2 exon
chr7:19080382-19080566
Length
72 bp
Sequences
Splice sites
3' ss Seq
CATGTTTCTTTCATTTAAAGGTA
3' ss Score
10.96
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATCTGAAAATGCCTGTGAAAAGACTTCATTTATGTTTCTGCGACAAGAGCTGCCTGTAAGATTAGCAAACATAATGAAGGAAATAAGTCTGCTTCCAGACAATCTTCTCAGAACACCTTCAGTTCAGCTGGTGCAGAGTTG
Seq A exon
GTATGTCCAAAGTCTTCAGGAGATCCTTGACTTTAAAGACAAAAGTTCGGAAGATTCGGGGGCTATTCACAG
Seq C2 exon
TTTTACAGATACCGTGATAAAAATACGCAATCGACACAACGATGTAATTCCTACTATGGCTCAAGGAGTAATAGAGTACAAGGAAAGCTTTGGCATTGATCCAGTGACCTCACAGAATGTGCAGTATTTTTTAGACCGTTTCTACATGAGTCGCATTTCAATTAGAATGCTCCTTAATCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013235-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGCTGGTGCAGAGTTG
R:
TGCGACTCATGTAGAAACGGT
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]