RnoEX0064560 @ rn6
Exon Skipping
Gene
ENSRNOG00000001517 | Pdk1
Description
pyruvate dehydrogenase kinase 1 [Source:RGD Symbol;Acc:69427]
Coordinates
chr3:58532915-58541776:+
Coord C1 exon
chr3:58532915-58533056
Coord A exon
chr3:58538253-58538324
Coord C2 exon
chr3:58541592-58541776
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGGGTTGATTTTAGGTA
3' ss Score
8.32
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGTCAGTAAATGCTTGTGAAAAGACCTCGTTCATGTTTCTTCGACAAGAGTTGCCTGTTAGATTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCCGATAATCTTCTCAGGACCCCATCCGTACAGCTGGTACAAAGTTG
Seq A exon
GTATATCCAAAGCCTTCAGGAGCTGCTTGACTTTAAGGACAAGAGTGCTGAGGATGCTAAAACTATTTATGA
Seq C2 exon
ATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATCCCCACCATGGCCCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAAAATGTTCAGTACTTTTTGGATCGGTTCTACATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001517-'6-7,'6-1,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGTGAAAAGACCTCGTTCA
R:
GGATGACATCATTGTGCCGGT
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]