MmuEX6102137 @ mm9
Exon Skipping
Gene
ENSMUSG00000006494 | Pdk1
Description
pyruvate dehydrogenase kinase, isoenzyme 1 [Source:MGI Symbol;Acc:MGI:1926119]
Coordinates
chr2:71713463-71721664:+
Coord C1 exon
chr2:71713463-71713604
Coord A exon
chr2:71718096-71718167
Coord C2 exon
chr2:71721480-71721664
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGATTTGTGTTTTAGGTA
3' ss Score
12.54
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GGTCAGTGAATGCTTGTGAAAAGACCTCGTTTATGTTTCTGCGACAAGAGTTGCCTGTTAGATTGGCAAATATAATGAAAGAAATCAGCCTCCTCCCCGACAATCTTCTCAGGACCCCATCCGTACAGCTGGTGCAAAGTTG
Seq A exon
GTATATCCAAAGCCTTCAGGAGTTGCTTGATTTTAAAGACAAAAGTGCTGAAGATGCTAAAACTATTTATGA
Seq C2 exon
ATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATTCCCACCATGGCCCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAAAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006494-'6-12,'6-7,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATCAGCCTCCTCCCCG
R:
TGACAGGATCCACCCCGAAG
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: