BtaEX6009023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24171402-24175154:-
Coord C1 exon
chr2:24175075-24175154
Coord A exon
chr2:24173155-24173410
Coord C2 exon
chr2:24171402-24171533
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCATCTGCTTGCAGACA
3' ss Score
8.33
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
CTGACCCTTCATCGGAAAGCAAGGAAGATCAGTGGATGGGAGTCACTGTCCAAAGCCAGGGTCCAGGCGGCAAAGTTGTG
Seq A exon
ACATGTGCTCATCGATATGAAAAAAGACAACATGTTAATACGAAGCAGGAATCCCGAGACATCTTTGGAAGGTGCTACGTCCTAAGTCAGAATCTCAGGATTGAAGATGATATGGATGGAGGAGACTGGAGTTTTTGTGATGGCCGGTTGAGAGGTCATGAAAAATTTGGTTCTTGCCAGCAAGGTGTAGCAGCTACTTTTACTAAAGACTTCCATTACATTGCGTTTGGAGCCCCAGGCACTTACAACTGGAAAG
Seq C2 exon
GGATTGTTCGTGTAGAGCAAAAGAATAACACTTTTTTTGACATGAACATCTTTGAAGATGGGCCTTATGAAGTTGGTGGAGAGACTGACCATGATGAAAGTCTAGTTCCTGTTCCTGCTAACAGTTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.023 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTCATCGGAAAGCAAGG
R:
AGCAGGAACAGGAACTAGACT
Band lengths:
196-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]