GgaEX0013767 @ galGal3
Exon Skipping
Gene
ENSGALG00000009362 | ITA6_CHICK
Description
NA
Coordinates
chr7:19109676-19117288:-
Coord C1 exon
chr7:19117162-19117288
Coord A exon
chr7:19111312-19111567
Coord C2 exon
chr7:19109676-19109807
Length
256 bp
Sequences
Splice sites
3' ss Seq
TACTATTTTCTATCTTGCAGACA
3' ss Score
10.46
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTGCTGGTTGGAGCTCCTCGGGAAAAGGCCTTTCCATCCCAACAAGCCAACAGAACGGGAGGGCTGTACAGCTGTGACATCACATCTTCAGATACGCGCTGCACGCGTGTTGTGTTTGATGAAGACA
Seq A exon
ACATGTGCACATCGCTATGAGAAAAGGCAGTATGTAAACACAGTGCAGGAAACCCGGGATATCATTGGAAGGTGCTACGTGCTGAGCCAGGATCTCACTATTAAGGATGATATGGATAATGGAGTATGGAGTTTTTGTGATGGCCGCTTAAGAGGCCATGAGAAGTTTGGTTCCTGTCAGCAAGGTGTTGCTGCTACTTTTACTAGAGACTATCATTACATTGTGTTTGGTGCCCCAGGCACTTACAATTGGAAAG
Seq C2 exon
GGGTGGTTCGTGCAGAGCAAAAGAATCAGACATTTTATGATCTGGGTATCTTTGATGATGGGCCTTACGAAGTTGGTGATGAGAGCCGCCAAGATAAGAATCTAGTTCCTGTTCCAGCTAACAGTTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'1-9,'1-8,4-9
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTTGGAGCTCCTCG
R:
GGAACTAGATTCTTATCTTGGCGGC
Band lengths:
236-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]