GgaEX0013767 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17231489-17235285:-
Coord C1 exon
chr7:17235206-17235285
Coord A exon
chr7:17233126-17233381
Coord C2 exon
chr7:17231489-17231620
Length
256 bp
Sequences
Splice sites
3' ss Seq
TACTATTTTCTATCTTGCAGACA
3' ss Score
10.46
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CTGACCCAAAGATGGAGAGCAAAGAAGACCAATGGATGGGTGTAACTGTCCAAAGTCAGGGGCCAGGAGGAAACGTGGTG
Seq A exon
ACATGTGCACATCGCTATGAGAAAAGGCAATATGTAAACACAGTGCAGGAAACCCGGGATATCATTGGAAGGTGCTACGTGCTGAGCCAGGATCTCACTATTAAGGATGATATGGATAATGGAGTATGGAGTTTTTGTGATGGCCGCTTAAGAGGCCATGAGAAGTTTGGTTCCTGTCAGCAAGGTGTTGCTGCTACTTTTACTAGAGACTATCATTACATTGTGTTTGGTGCCCCAGGCACTTACAATTGGAAAG
Seq C2 exon
GGGTGGTTCGTGCAGAGCAAAAGAATCAGACATTTTATGATCTGGGTATCTTTGATGATGGGCCTTACGAAGTTGGTGATGAGAGCCGCCAAGATAAGAATCTAGTTCCTGTTCCAGCTAACAGTTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGAGAGCAAAGAAGACCA
R:
TGGAACAGGAACTAGATTCTTATCT
Band lengths:
188-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]