BtaEX6009127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26245917-26248644:-
Coord C1 exon
chr2:26248540-26248644
Coord A exon
chr2:26248205-26248304
Coord C2 exon
chr2:26245917-26245993
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGCGATGGGACTCCATGAAGGGC
3' ss Score
-0.34
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCAGTCACCGAGCTTGTCAAAAGTCTACTTAGGTGCAACCAGCGGTTGGACGAAGCAGTGATCTCATACATCTTATATGGGGCCCTCTTG
Seq A exon
GGCCTTCAGCATTTGCACAATAACCGAATCATCCACCGTGATGTCAAGGGGAATAACATTCTTCTGACAACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
Seq C2 exon
GTGTCTCAGCTCAACTCACCAGTACACGTCTACGGAGAAACACATCTGTTGGCACCCCATTCTGGATGGCCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTAATGGGGGCTCAGTCA
R:
CTCAGGGGCCATCCAGAATG
Band lengths:
181-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]