MmuEX6102038 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:69943434-69946755:+
Coord C1 exon
chr2:69943434-69943538
Coord A exon
chr2:69943711-69943810
Coord C2 exon
chr2:69946679-69946755
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGTGCTGGGACACCGGACAGGGC
3' ss Score
-0.95
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCTGTCACTGAGCTTGTCAAGGGCCTTCTGAGGTGCGGCAAGAGGCTGGACGAAGCTGTGATTTCCTACATTCTGTATGGAGCCCTCTTG
Seq A exon
GGCCTTCAGCATTTGCACTGCCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
Seq C2 exon
GTGTCTCTGCTCAACTTACAAGCACACGGCTGCGGAGAAACACATCAGTTGGGACCCCATTCTGGATGGCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTAATGGGGGCTCTGTCA
R:
GGGGTCCCAACTGATGTGTTT
Band lengths:
162-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: