GgaEX0014221 @ galGal3
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
NA
Coordinates
chr7:19894882-19898993:-
Coord C1 exon
chr7:19898889-19898993
Coord A exon
chr7:19898527-19898626
Coord C2 exon
chr7:19894882-19894958
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTGTTACTGCTGGCGTATAGGGC
3' ss Score
4.21
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
CTGTGCAATGGAGGGTCTGTCACAGAACTTGTCAAAGGTTTGCTGAAGTGTGGCCAACGTTTGGATGAAGCAATGATTTCATATATCTTATATGGTGCTCTCTTG
Seq A exon
GGCCTTCAGCATTTACACAATAACCGGATCATTCATCGAGATGTCAAAGGGAACAACATTCTTCTGACAACAGAAGGTGGAGTCAAGCTCGTTGACTTTG
Seq C2 exon
GTGTTTCAGCCCAGCTCACCAGCACACGGCTTCGTAGAAACACCTCAGTAGGAACACCCTTTTGGATGGCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAATGGAGGGTCTGTC
R:
GGAGCCATCCAAAAGGGTGTT
Band lengths:
178-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]