DreEX6034846 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3885448-3890219:-
Coord C1 exon
chr9:3890115-3890219
Coord A exon
chr9:3889876-3889975
Coord C2 exon
chr9:3885448-3885524
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGCTTCATTCTCAGGGT
3' ss Score
10.6
5' ss Seq
TCGGTAATA
5' ss Score
5.91
Exon sequences
Seq C1 exon
TTGTGTAATGGAGGTTCAGTTACTGACCTGATAAAGGGTTTGCTGATGAGGGGAAAACGTCTCGAGGAGCCCATCATCTCCTACATCCTGTGTGGAGCGCTGCTG
Seq A exon
GGTCTCCAGCATCTTCACAATAACCGAATCATCCACCGTGATGTGAAGGGCAACAACATCCTCCTCACCACTGACGGTGGAGTCAAACTGGTGGACTTCG
Seq C2 exon
GTGTCTCAGCTCAGTTGACAAGTGCCCGTTTGCGCCGAAACACATCAGTGGGAACCCCATTCTGGATGGCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATGGAGGTTCAGTTACTGACC
R:
CATCCAGAATGGGGTTCCC
Band lengths:
170-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]