RnoEX6017352 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56364939-56368174:+
Coord C1 exon
chr3:56364939-56365043
Coord A exon
chr3:56365230-56365329
Coord C2 exon
chr3:56368098-56368174
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGTGCTGGGACATCATTCAGGGC
3' ss Score
1.69
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCCGTCACTGAGCTTGTCAAGGGCCTCCTGAGGTGTGGTAAGCGGCTGGATGAAGCTCTGATCTCCTACATTCTGTATGGATCCCTCTTG
Seq A exon
GGCCTTCAGCACTTGCACCATCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
Seq C2 exon
GTGTCTCTGCTCAACTTACAAGCACACGGCTACGGAGAAACACATCGGTTGGGACCCCATTCTGGATGGCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAATGGGGGCTCCGTC
R:
CCAACCGATGTGTTTCTCCGT
Band lengths:
157-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]