BtaEX6009143 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26006069-26016793:-
Coord C1 exon
chr2:26016714-26016793
Coord A exon
chr2:26008275-26008352
Coord C2 exon
chr2:26006069-26006274
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGCTTATGTTCCAGGTG
3' ss Score
11.48
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTAACTTGGCCCAGACAAGAGCCAGGATAACAGCAGCCTCAAGATCTTTGCCTCCGCATTTCAGTTCTGGGAGACTCAAG
Seq A exon
GTGGACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGGGGCAAACCATGGCTTCTTACTTTCGG
Seq C2 exon
TATTCTCTGATGGATCTGCTCTCTAAAATGGTGGTGGGACAGCCCCACTTTGTACGCTGCATCAAGCCCAATGATGACCGAGAGGCCCTGAAGTTCTCCACAGACAAAGTGCGGGCCCAGCTCCGCTCCACGGGCATCCTAGAGACAGTCAGCATCCGCCAGCAGGGGTATTCTCACCGCATCCTCTTCGAGGAGTTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626-'28-25,'28-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCGCATTTCAGTTCTG
R:
TGACTGTCTCTAGGATGCCCG
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]