DreEX0048691 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3798152-3804869:-
Coord C1 exon
chr9:3804790-3804869
Coord A exon
chr9:3799038-3799115
Coord C2 exon
chr9:3798152-3798357
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGTGTGTGTTTAGGTG
3' ss Score
10.41
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTAATCTGGCCACATCCAGAGCAAGAGTGACAGCAGCCTCCAGATCTCTGCCTCCGCAACTCAACAGCGGAAGAAATAAG
Seq A exon
GTGGACACCATGGAAATGATGCGTCACCCTGAAGAAACCACTAACATGAGGAGACAGACAGTGGCGTCTTATTTCAGG
Seq C2 exon
TACTCTCTTATGGACTTGCTGTCCAAGATGGTGGTCGGGACACCTCATTTCGTGCGCTGTATCAAACCTAATGACGACCGACAGGCTCTGCGCTTCAATAAAGAGCGTGTGATGGTTCAGCTGCGCTACACCGGCATCCTGGAGACCGTCAACATCCGCAGACAGGGCTATTCCCACCGCATCCTCATCCAGGAGTTCGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'23-24,'23-23,25-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.467 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAGCCTCCAGATCTCT
R:
GCTGAACCATCACACGCTCTT
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]