RnoEX6017337 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56550299-56560479:+
Coord C1 exon
chr3:56550299-56550378
Coord A exon
chr3:56557710-56557787
Coord C2 exon
chr3:56560274-56560479
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTCTGGCTCCAGGTA
3' ss Score
11.33
5' ss Seq
CGGGTACGA
5' ss Score
8.06
Exon sequences
Seq C1 exon
GTAATTTGGCACAAACGAGAGCTAGGATCACAGCCTCCTCGAGATCTTTGCCTCCACATTTCAGTGCTGGGAGGGCTAAG
Seq A exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
Seq C2 exon
TATTCTCTGATGGATCTGCTCTCCAAAATGGTGGTTGGACAGCCCCATTTCGTTCGTTGCATTAAGCCTAATGACGACCGCAAGGCCCTGCAATTCTCCCAAGACAGAGTCTTGGCCCAGCTTCGCTCCACAGGGATCCTGGAGACTGTCAGCATCCGCAGGCAGGGCTACTCCCATCGCATCCTTTTCGAAGAGTTTGTAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'28-29,'28-28,31-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAGTGCTGGGAGGGCTA
R:
TGCTGACAGTCTCCAGGATCC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]