GgaEX1038124 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17838629-17844611:-
Coord C1 exon
chr7:17844532-17844611
Coord A exon
chr7:17839816-17839893
Coord C2 exon
chr7:17838629-17838834
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATCTGAGTTTTGTCTTCCAGGTT
3' ss Score
9.12
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GTAACTTGGCACAGGCAAGAGCCAGAGTGACAGCGGCATCTAGGTCTTTGCCCCCACAGCTTACTGCTGGGCGTATTAAG
Seq A exon
GTTGACACAATGGAAGTTATGCGACACCCTGAGGAAACAACTAACATGAAGCGACAAACTATGGCTTCCTATTTTAGG
Seq C2 exon
TATTCCCTCATGGATCTTCTATCCAAAATGGTTGTTGGACAGCCTCACTTTATCCGCTGCATTAAACCTAATGATGATCGAGAAGCACTAACATTTTCTCATGAGAGAGTTCTACTGCAGCTACGATACACTGGAATTCTGGAAACTGTCAAAATACGTCAAAAAGGATATTCTCATCGCATACTTTTTGAAGAGTTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'39-40,'39-37,43-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.596 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTAGGTCTTTGCCCCCACA
R:
CCAGTGTATCGTAGCTGCAGT
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]