MmuEX6102021 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70281153-70289575:+
Coord C1 exon
chr2:70281153-70281232
Coord A exon
chr2:70286919-70286996
Coord C2 exon
chr2:70289370-70289575
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCTTCTGCCTCCAGGTA
3' ss Score
12.77
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTAATTTGGCACAAACCAGAGCTAAGATCACAGCATCCTCGAGATCTTTGCCTCCACATTTCAGTGCTGGGAGGGCCAAG
Seq A exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
Seq C2 exon
TATTCTCTGATGGACCTGCTCTCCAAAATGGTGGTCGGACAGCCTCACTTTATTCGTTGCATTAAGCCTAATGATGACCGCAAGGCCCTGCAGTTCTCCCAAGACAGAGTCTTGGCCCAGCTTCGCTCCACGGGCATCCTGGAGACCGTCAGCATCCGCAGGCAGGGCTACTCCCATCGCATCTTCTTTGAAGAGTTTGTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'41-41,'41-40,44-41=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTTCAGTGCTGGGAGGG
R:
GATGCTGACGGTCTCCAGGAT
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types