BtaEX6009160 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26462652-26476008:-
Coord C1 exon
chr2:26475854-26476008
Coord A exon
chr2:26473787-26473883
Coord C2 exon
chr2:26462652-26462793
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTTGAATGATAGCTG
3' ss Score
6.23
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ACACATGCATCATATTCCAGAAAATCCAAATCCTAAAAGTGGTATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCAGCAGTAGCTGATTTTAAGGCTCCTGTTTTTGAACCTGGAGGTTCTATGCAACAAGGCATGTATACTCCTAAAG
Seq A exon
CTGAAGTCTGGGATCATGAATTTGACCCCGTCATGGTCATTCTTCGAACAGTTTACCGTAGAGACGTGCAGTCTGCAATGGACAGATACACAGCATT
Seq C2 exon
TTTAAAACAGAGTGGAAAATTCCCTGGAAATCCTTGGCCACCCTATAAGAAAAGGACACCACTCCATCCCAGCTATAAAGGTCTCATGAGACTTTTGCACTGTAAAACTTTACACATTGTGCTATTCACTCTGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGAATCAGTTTTATCAGCAGT
R:
TAGCTGGGATGGAGTGGTGTC
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]